FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943996

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943996
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515176
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49180.9546252154603476No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31990.6209528394179853No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA21540.41810953926425143No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17580.3412426044691523No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14380.2791279096852338No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14170.27505163284003914No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13810.26806372967684833No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11330.21992484121931147No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10550.20478438436573135No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC10110.19624361383294253No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9960.19333198751494635No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9170.17799742224016646No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7780.15101635169340188No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7710.14965759274500365No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7590.1473282916906067No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6990.135681786418622No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6720.13044085904622887No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6640.1288879916766309No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6020.11685326956224669No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA5820.11297110113825178No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA5780.1121946674534528No Hit

[OK]Adapter Content

Adapter graph