FastQCFastQC Report
Sun 21 May 2023
EGAF00007943999

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943999
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences557786
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT40470.725547073608875No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC39660.7110253753231526No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA31980.5733381619474135No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA25100.4499933666316473No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT24200.43385814631417785No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT20220.36250461646581306No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA19260.3452937147938457No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA18920.33919818711835725No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG18530.3322062583141205No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT16530.2963502131641884No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT13360.23951838160154612No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT13280.23808413979554882No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG12960.2323471725715597No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG12220.21908043586608486No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11960.21441914999659367No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA10180.18250726981315415No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9480.16995765401067794No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8770.15722875798245206No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8490.15220891166146155No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8030.1439620212769772No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA7980.1430656201482289No Hit
CAGTTCAACAGTACGCGGGATGGACATCAGGCTAGCCCAGCCTT7690.13786649360148875No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7680.13768721337573908No Hit
GTAGCCAGAACCATCGGAACCGGTAACCGGAGCTGCTTTGGAGC7550.1353565704409935No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6940.12442047667026422No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT6730.12065559192952136No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG6510.11671142696302883No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6420.11509790493128189No Hit
GTCGCCCGGCAGCGGTGCAGTCGGAGCCCACGGGGAGTTACCGT6390.11456006425403292No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC6340.11366366312528461No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC6120.10971949815879209No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5990.1073888552240465No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)