FastQCFastQC Report
Sun 21 May 2023
EGAF00007944004

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944004
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543304
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19020.35008024973127383No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12760.23485930528764745No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9670.17798506913256665No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9380.1726473576487565No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8530.1570023412306922No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7660.14098920677926172No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7060.12994566577827515No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6950.12792101659476093No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6400.11779777067718994No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6370.11724559362714061No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6140.1130122362434291No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5940.10933105590976691No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5910.10877887885971757No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)