FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944005

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944005
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences575050
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12930.22485001304234417No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12120.21076428136683764No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11730.2039822624119642No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10960.19059212242413703No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8810.15320406921137292No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8420.14642205025649943No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8130.14137901052082427No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7280.12659768715763847No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6970.12120685157812365No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA6020.10468654899573951No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)