FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007944006

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944006
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences575050
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29670.5159551343361447No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18150.315624728284497No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15360.26710720806886357No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11480.19963481436396838No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11330.19702634553517084No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9810.17059386140335622No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8440.1467698461003391No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7910.13755325623858794No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7440.12938005390835577No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7370.12816276845491695No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA6300.10955569080949483No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)