FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007944008

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944008
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563003
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26080.4632302136933551No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14790.26269842256613196No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11840.21030083321048024No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11790.20941273847563868No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11640.206748454271114No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9070.16110038490025808No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7590.13481278074894806No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7080.1257542144535642No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6250.11101184185519437No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6250.11101184185519437No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5820.103374227135557No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)