FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007944010

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944010
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526436
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA68501.3012028052792743No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48000.9117917467650388No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA36780.698660425958711No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA33720.6405337021024398No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18240.3464808637707148No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC15900.3020310161159191No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC14160.2689785652956864No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13860.263279866878405No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13500.2564414287776672No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA12160.23098724251380984No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9950.18900683083983616No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9850.18710726470074235No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9200.17476008479663246No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8090.15367490065269093No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6930.1316399334392025No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6880.13069015036965556No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6790.1289805408444711No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6690.1270809747053773No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG6290.11948271014900196No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6200.11777310062381752No Hit
TCCGTCGACCGTTCCGGCCATTCCGGTTACC6020.11435388157344861No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5960.11321414188999233No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5670.10770540008662022No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5510.10466609426407007No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5480.10409622442234194No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5390.10238661489715749No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)