FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944014

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944014
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498899
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT76781.5389888534553087No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA14340.2874329273059277No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11520.23090846042986657No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT11340.2273005157356499No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG11150.22349212966953233No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10640.2132696197025851No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG9610.19262415839678973No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG9500.19041930330587956No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9420.18881577233067215No Hit
ACTCGTCTGGAAAACATCAAAACCGACCGTA9020.18079811745463512No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA8770.17578708315711197No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8590.1721791384628953No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8420.16877163514057958No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8290.1661658973058675No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC8290.1661658973058675No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8170.1637606008430564No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7880.15794780105792955No Hit
GCTGAAGAGACTACCATCGAAAACGGCATCT7440.14912838069428883No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7320.1467230842314777No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7290.14612176011577493No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6800.13630013289262957No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC6790.13609969152072865No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6480.12988600899179994No Hit
TCTACCCAGCACACTGTTCAGTCCGGCGAAA6120.1226701196033666No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6100.12226923685956476No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5960.1194630576529518No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5840.11705776119014068No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5750.11525378884303236No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5720.11465246472732958No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5560.11144540277691477No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5490.11004231317360828No Hit
ATGGAACGTCAGCTGCCAAAAAACGTTCGCC5440.10904010631410366No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG5170.10362818927277867No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)