FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007944016

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944016
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482906
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT66351.373973402691207No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45290.9378636836154449No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23730.4913999826053103No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19770.40939644568508154No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA14730.30502830778660855No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11530.23876282340662575No Hit
TCCTACACCAACGGCAAACTGACTATCACCC11510.23834866412925085No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11230.23255043424600233No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG10260.21246370929332No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10200.2112212314611953No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10180.21080707218382047No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9930.2056300812166343No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA9120.18885663048295115No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9030.1869929137347641No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8110.16794158697551906No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA7970.1650424720338948No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7770.16090087926014587No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7450.1542743308221476No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7340.15199645479658566No Hit
GAACCGATCTACGCTACCATCGACGACCTGG7000.1449557470812125No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA6060.12549026104459254No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6020.12466194248984275No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5910.12238406646428084No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5690.11782831441315703No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5680.11762123477446958No Hit
ATCAAAGACCTGCAGGCACAGGTGGTAGAAA5430.1124442438072834No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5030.10416105825978555No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)