FastQCFastQC Report
Wed 31 May 2023
EGAF00007944017

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944017
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495871
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18590.3748958902617818No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18170.3664259454575888No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14600.29443141462194805No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG14390.2901964422198515No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14360.28959144616240917No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14010.28253315882558167No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13010.262366623577503No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12540.25288835201090604No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12300.2480483835513672No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11630.2345368049351545No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11590.2337301435252314No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10880.21941190349909553No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG10310.20791697840769072No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC9850.19864037219357455No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT9790.19743038007868982No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT9720.1960187226113243No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9460.19077542344682386No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9210.18573378963480422No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG9060.18270880934759243No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA8980.18109548652774612No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8790.1772638448306112No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG8570.17282720707603388No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8310.16758390791153344No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7990.16113061663214828No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7890.1591139631073404No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7450.15024068759818582No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7410.14943402618826268No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7280.14681237660601243No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7180.14479572308120459No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT7000.14116574673655044No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6970.1405607506791081No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG6900.13914909321174257No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6840.13793910109685784No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT6560.13229247122739585No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6520.13148580981747268No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG6510.1312841444649919No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6490.13088081376003033No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6450.1300741523501072No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG6300.1270491720628954No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5860.11817589655374078No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT5810.11716756979133687No Hit
TTCCAGTTCGGACATACGGTCGTACGGAATAAAGTGGAAGTGAT5760.11615924302893292No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5740.11575591232397137No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5670.11434425485660583No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC5490.11071427851195169No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5430.10950428639706698No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5300.10688263681481674No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT5270.10627764075737439No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5190.1046643179375281No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)