FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944018

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944018
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495871
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46890.9456088377824072No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32270.6507740924554974No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25370.5116249992437549No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19290.38901246493543684No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18600.3750975556142626No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17930.3615859769980499No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14620.2948347453269096No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14030.28293648953054323No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12600.2540983441257908No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12050.24300674973934755No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11810.23816678127980867No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG11370.22929350577065408No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11190.2256635294259999No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10910.22001689955653791No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10840.21860524208917237No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10510.21195028545730643No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC9950.20065702571838243No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9910.19985036430845926No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9850.19864037219357455No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA9670.19501039584892038No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG9510.1917837502092278No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9490.1913804195042662No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT9150.1845237975199195No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG9020.18190214793766926No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8760.17665884877316884No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7950.16032395522222515No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7680.1548789907052439No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7670.15467732535276313No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7480.15084568365562817No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7390.1490306954833011No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC7380.14882903013082033No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT7080.14277906955639671No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7040.14197240814647358No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6950.1401574199741465No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6880.138745762506781No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA6780.13672910898197313No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6570.1324941365798766No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG6550.13209080587491506No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6430.1296708216451456No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC6100.12301586501327966No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6000.12099921148847181No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC5910.11918422331614473No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5870.11837756190622158No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5800.11696590443885607No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC5760.11615924302893292No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5520.11131927456939407No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT5350.1078909635772207No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5290.10668097146233597No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5190.1046643179375281No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA5070.10224433370775868No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5000.10083267624039316No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)