FastQCFastQC Report
Wed 31 May 2023
EGAF00007944019

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944019
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515816
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16790.3255036679746266No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14430.27975091893233245No Hit
GAACTCGGTCAGGCCCATGCGGCGTTTGTTGGAGATGTCGTAAA12750.24718116537680102No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11730.22740667214665697No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11070.21461141182126958No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8770.1700218682631016No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8770.1700218682631016No Hit
AAATTCGGTCAGGCCCATACGACGTTTGTTAGAGATGTCGTAGA8490.16459357600384633No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7900.1531553887432728No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7850.15218605083983436No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7800.15121671293639594No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7400.14346200970888845No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7000.13570730648138096No Hit
GCCACGGCTCAGCTGAGAGCGGATTTTACGGTACTGGCCAGAAC6600.12795260325387348No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6570.1273710005118104No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6260.12136110551049212No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5410.10488236115203872No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5270.10216821502241111No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT5270.10216821502241111No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5230.10139274469966035No Hit

[OK]Adapter Content

Adapter graph