FastQCFastQC Report
Sun 21 May 2023
EGAF00007944022

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944022
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468722
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41490.8851728743263598No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13530.2886572424592829No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11440.2440679123232961No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11000.23468068492624627No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6940.14806217758074083No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6930.14784883150353514No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6770.14443529426824428No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6730.14358190995942158No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6720.1433685638822159No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6480.13824825802927962No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6250.133341298253549No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5650.1205405336212083No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5640.12032718754400264No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5610.1196871493123856No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5590.11926045715797425No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5570.11883376500356288No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG5560.1186204189263572No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5030.10731307683445625No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4970.10603300037122217No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)