FastQCFastQC Report
Wed 31 May 2023
EGAF00007944032

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944032
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498099
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA24230.4864494809264825No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17720.35575257127599136No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15140.30395563934077363No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA12080.24252206890598055No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10250.20578238462634935No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10210.20497933141805144No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9150.1836984213981558No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8650.17366025629443144No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8290.16643277741974988No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7550.15157629306623785No Hit
GCAGTCACCACCGAAGTTGCATTCGGTCTGG6770.13591675550442783No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6660.13370835918160848No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6540.13129919955671462No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6500.13049614634841666No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC6210.12467401058825656No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6140.12326866747373515No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6090.1222648509633627No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5790.11624195190112808No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5670.11383279227623425No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5150.1033931005683609No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5050.10138546754761603No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5010.10058241433931808No Hit

[OK]Adapter Content

Adapter graph