FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944041

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944041
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514361
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG36830.7160340694570545No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG26600.5171465177181007No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG26220.5097587103221278No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14340.27879252120592346No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13070.2541016912246457No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10660.20724743905544937No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG10300.20024846362768559No Hit
CAGACCTGCATCCGCGATTGCATACGCACCGTAGTCAGTGGAAC9320.1811956971854398No Hit
GACTTTCGGACCGGCGGTCAGCAGAGCCGCGCCTTTAGTGGTCA9290.18061244923312617No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8200.1594211069657303No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8050.15650486720416207No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA7690.14950589177639828No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG7520.14620082004662094No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6130.11917699825608863No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5290.10284605559130648No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)