FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944042

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944042
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514361
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG36640.712340165759068No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG28690.5577794583959514No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27010.5251175730663873No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG25450.4947886795460776No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14920.2900686482839873No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG11760.22863319730694978No Hit
GTTAAACCGGATGCTGGCGTTAACGATGGCG9340.1815845291536489No Hit
GACGTGACGGATACCGTGGTTGTTAACATTA9340.1815845291536489No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9280.1804180332490216No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8320.1617540987749849No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8290.16117085082267124No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA7870.15300537949028017No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG7870.15300537949028017No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6280.12209323801765685No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5350.10401255149593377No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)