FastQCFastQC Report
Wed 31 May 2023
EGAF00007944043

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944043
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497490
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG35070.7049387927395525No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG25360.5097589901304549No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG24130.4850348750728658No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13870.27879957386078114No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12810.25749261291684256No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11000.22110997205973987No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG10370.20844640093268207No Hit
GACTTTCGGACCGGCGGTCAGCAGAGCCGCGCCTTTAGTGGTCA9240.18573237653018151No Hit
CAGACCTGCATCCGCGATTGCATACGCACCGTAGTCAGTGGAAC9100.18291824961305755No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8340.16764156063438462No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7550.1517618444591851No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA7380.1483446903455346No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG7010.14090735492170697No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5650.11357012201250276No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5030.10110755995095379No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)