FastQCFastQC Report
Wed 31 May 2023
EGAF00007944044

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944044
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497490
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45030.9051438219863716No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG34320.6898631128263885No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26940.5415184224808539No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG26570.5340810870570263No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG23090.464129932259945No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13780.2769904922712014No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG11110.2233210717803373No Hit
GACGTGACGGATACCGTGGTTGTTAACATTA9150.18392329494060183No Hit
GTTAAACCGGATGCTGGCGTTAACGATGGCG8810.17708898671330076No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8290.16663651530684034No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7750.1557820257693622No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG7610.15296789885223824No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA7050.1417113911837424No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5540.11135902229190536No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5470.10995195883334338No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)