FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944045

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944045
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500316
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG36120.721943731561653No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG25980.5192718202096275No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG25170.5030820521430456No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14470.28921721472029677No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13110.26203439426282593No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG11120.2222595319757913No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10420.20826837438738718No Hit
CAGACCTGCATCCGCGATTGCATACGCACCGTAGTCAGTGGAAC9190.18368391176776278No Hit
GACTTTCGGACCGGCGGTCAGCAGAGCCGCGCCTTTAGTGGTCA8730.17448972249538292No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8300.1658951542625061No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA7670.15330311243294237No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7520.1503050072354272No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG6870.1373132180461948No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6130.1225225657384533No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5180.10353456615419054No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5030.10053646095667537No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)