FastQCFastQC Report
Wed 31 May 2023
EGAF00007944046

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944046
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500316
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44980.8990318118948823No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG34990.6993580057403721No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27630.5522509773822945No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG27440.5484533774654419No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG24250.48469367359828586No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14410.2880179726412907No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG12040.240647910520551No Hit
GTTAAACCGGATGCTGGCGTTAACGATGGCG8830.17648845929372636No Hit
GACGTGACGGATACCGTGGTTGTTAACATTA8810.17608871193405767No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8280.1654954069028374No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7850.1569008386699606No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG7740.1547022281917828No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA7160.1431095547613908No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5950.11892483950143508No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5640.11272875542657042No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5140.10273507143485318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)