FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944047

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944047
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504652
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10640.2108383598994951No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9430.1868614411515262No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8430.1670458058226263No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8160.1616955842838233No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT6460.12800900422469344No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6290.12464034621878047No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6010.11909196832668849No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5550.10997677607539452No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5460.10819336889579353No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5280.10462655453659156No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5160.10224867829712356No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT5060.10026711476423357No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)