FastQCFastQC Report
Wed 31 May 2023
EGAF00007944048

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944048
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504652
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCGAACCTACTACTGATTACGGCGGTGACT10810.21420701790540808No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10310.20429920024095813No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10280.20370473118109114No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9890.19597663340282018No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9860.19538216434295316No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8720.17279234006800726No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8600.17041446382853928No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6470.12820716057798245No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6130.12146984456615649No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5940.1177048738536655No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5890.1167140920872205No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5530.10958046336881652No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5440.10779705618921553No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5340.10581549265632556No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5220.10343761641685754No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)