FastQCFastQC Report
Wed 31 May 2023
EGAF00007944050

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944050
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499099
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA32160.6443611387720672No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG27950.560009136463908No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27300.5469856681740496No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22780.456422473296881No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16100.32258129148726006No Hit
ATGTCCAACATGGACATCGATGGTATTAACA14920.2989386875149018No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14580.29212641179405285No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14520.29092424549037366No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14390.288319551832402No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC13150.26347478155636456No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11740.23522387341990267No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11370.22781051454721407No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10000.20036105061320497No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG9950.19935924536013896No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9360.18753794337395988No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9150.18333036131108257No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8250.1652978667558941No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7510.15047114901051695No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7490.15007042690929054No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7480.14987006585867735No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA7370.1476660943019321No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6640.13303973760716814No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6580.1318375713034889No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6520.13063540499980966No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6480.12983396079735685No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6280.12582673978509273No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA6280.12582673978509273No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6130.12282132402589466No Hit
AACGGTAACCGTTGCGAATGGTTTTTCAAGT5980.11981590826669658No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5700.11420579884952684No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5690.11400543779891364No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG5580.11180146624216837No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5400.1081949673311307No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)