FastQCFastQC Report
Wed 31 May 2023
EGAF00007944051

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944051
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514817
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23570.45783258905591695No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT23010.44695493738551756No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20250.39334365415283495No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19360.376055957748093No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16490.32030799293729617No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT16190.31448067954243936No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15000.2913656697428406No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14780.28709230658661233No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14780.28709230658661233No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT13350.2593154460711282No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13030.25309964511661426No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10990.2134739140315879No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10930.21230845135261656No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10820.2101717697745024No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10490.2037617250401599No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT8980.17443091428604726No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG8630.16763238199204766No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8060.1565604865418197No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7830.15209287960576282No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG7530.146265566210906No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6880.1336397205220496No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6840.13286274540273535No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6770.13150303894393542No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6310.12256782507182164No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA6050.11751748679627906No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5980.11615778033747914No Hit
GGTCAGGATGGTGCTACGGCGGCCTTTACGCTTGCGTTCCATAG5960.11576929277782202No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5850.11363261119970786No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5730.11130168584176513No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5520.10722256646536538No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT5480.10644559134605112No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT5290.10275495952930848No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5240.10178374063016568No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)