FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944059

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944059
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528188
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17370.32886017857278094No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14360.2718728937423796No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11960.22643452710019918No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10090.1910304664248336No Hit
AACGCTACGGATGTTCGCCACGCACAGGGTGTTGTTGGTAGACG7230.13688307950956857No Hit
ACCGGCCATGCCACGTTCGCCCGGCAGGCCAGGGTTACCATCCT6550.12400887562761743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)