FastQCFastQC Report
Sun 21 May 2023
EGAF00007944061

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944061
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490906
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC28810.5868740655033754No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22930.4670955335644706No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19230.39172468863692844No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18700.38092832436352375No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA17680.360150415761877No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14070.2866129157109508No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13800.2811128810811031No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG13180.2684831719310825No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA12550.25564975779477134No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT11750.23935335889151893No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11630.2369088990560311No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8870.18068632283981048No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8500.17314923834705626No Hit
CGGCGGCAGCGGCAGGCCTGCGCGGTTGGTCAGGCTACCGCTGA7860.16011211922445437No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7330.1493157549510497No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7310.1489083449784684No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7230.14727870508814314No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7230.14727870508814314No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG7120.14503795023894595No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5220.1063340028437216No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5220.1063340028437216No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5190.10572288788484965No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)