FastQCFastQC Report
Wed 31 May 2023
EGAF00007944062

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944062
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490906
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC38730.7889494119037046No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23190.47239186320802756No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20860.42492860140230515No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT20670.42105820666278265No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG20360.41474335208777235No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC15020.305964889408563No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13790.2809091760948125No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG13690.2788721262319059No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13480.2745943215198022No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12870.2621683173560722No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC12550.25564975779477134No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10160.2069642660713049No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9400.19148268711321514No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9370.1908715721543432No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8910.1815011427849731No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8640.17600110815512543No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8560.17437146826480018No Hit
TTCATCTCTGGTACCGACGGTCTGCTGCCAG8080.16459362892284876No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG7640.15563060952605998No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7630.15542690453976932No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7100.14463054026636463No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5780.11774148207599827No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA5700.11611184218567301No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5610.11427849730905712No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5560.11325997237760387No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5400.11000069259695339No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5290.10775993774775619No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5030.10246360810419917No Hit
GAACCGATCTACGCTACCATCGACGACCTGG4910.10001914826871132No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)