FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944066

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944066
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468245
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17060.36433918141144056No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14440.30838556738459566No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10770.23000779506454952No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9860.21057352454377518No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8700.18580016871509572No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6480.13838909118089887No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6450.13774840094395027No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6260.13369069610994244No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6080.12984655468825082No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5370.11468355241380046No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5150.10998515734284402No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4730.10101549402556353No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)