FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007944067

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944067
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489908
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG24140.49274557672052716No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG18580.3792548805081771No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG18370.3749683614066314No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16320.3331237701772578No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11480.2343297108844926No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11350.23167615144067868No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11060.22575667268140143No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10110.206365276745838No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7400.15104876834017816No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7340.14982404859687942No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7170.14635400932419965No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7070.1443128097520351No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6410.1308408925757489No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6140.1253296537309046No Hit
ATACAGGCCGGTCTGCGGGCAAACGCTCACACCTTTGACACCGG6000.12247197432987418No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5360.10940829706802092No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5140.10491765800925887No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5050.10308057839431078No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG4930.10063113890771329No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4900.10001877903606392No Hit

[OK]Adapter Content

Adapter graph