FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007944075

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944075
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434122
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9290.2139951442221311No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8050.1854317449933429No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7710.17759984520480418No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT7140.16446989555931282No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5940.1368278963056468No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4980.11471429690271398No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4550.10480924717015032No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)