FastQCFastQC Report
Wed 31 May 2023
EGAF00007944076

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944076
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434122
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11830.27250404264239086No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8440.19441539475078434No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8290.19096014484407609No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7760.17875159517370692No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT7750.17852124517992637No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6530.15041854593869924No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5320.1225461966912527No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4700.10826449707685858No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)