FastQCFastQC Report
Wed 31 May 2023
EGAF00007944078

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944078
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483576
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44630.9229159428921203No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21760.4499809750690688No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13580.2808245239631413No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12210.2524939202938111No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11690.24174069846311644No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9450.19541912750012405No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9290.19211044385991033No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA9030.18673383294456303No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8950.18507949112445612No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8200.16957003656095423No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7440.15385378926993898No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7240.14971793471967176No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6660.13772395652389696No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC6260.12945224742336262No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6250.12924545469584925No Hit
TACCTGGAGACCCAGCAGAAAATCAACCACC5590.11559713467996757No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5550.11476996376991414No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5540.11456317104240078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)