FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944080

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944080
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490366
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14000.2855010339216014No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9950.202909663394281No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8990.18333244963965692No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6410.13071868767410463No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6050.12337723251612061No Hit
TCCATCGCAGCCCGTGGTTACATTAGCACCC4960.1011489377322245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)