FastQCFastQC Report
Wed 31 May 2023
EGAF00007944082

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944082
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476465
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT94201.977060224780414No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44660.9373196352302897No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32020.6720325732215378No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24970.5240678748701374No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24890.5223888428321073No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG16410.3444114468009193No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC16290.3418928987438742No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14320.30054673480738353No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13370.2806082293557764No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12670.26591669902301324No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12390.26004008688990793No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11700.24555843556189855No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11230.23569412233847187No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10500.22037295499144743No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA9530.20001469153033274No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG9320.19560723243050382No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8880.18637255622133841No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8140.1708415098695602No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7290.15300179446549064No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7040.14775481934664667No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6810.14292760223731021No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6200.13012498294733085No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6060.12718667688077823No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5920.1242483708142256No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5890.12361873379996431No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5530.11606308962882898No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5430.11396429958129138No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC5380.1129149045575226No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5280.11081611450998499No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5220.10955684048146244No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5210.10934696147670868No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5100.10703829242441733No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4970.10430986536261845No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4940.10368022834835718No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4880.10242095431983463No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG4790.10053204327705079No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)