FastQCFastQC Report
Sun 21 May 2023
EGAF00007944084

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944084
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420240
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37780.8990100894726823No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21750.5175613934894346No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG15550.370026651437274No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13320.316961736150771No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12770.3038739767751761No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12340.2936417285360746No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10790.25675804302303445No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8860.21083190557776507No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8810.20964210927089283No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8330.19822006472491907No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8200.1951265943270512No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7660.18227679421283075No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6950.1653816866552446No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG6270.14920045688178185No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6240.14848657909765847No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6210.14777270131353512No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT6040.14372739387016942No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5230.12445269369883877No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5210.12397677517608985No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4850.11541024176660956No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4850.11541024176660956No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4790.11398248619836283No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4460.10612983057300589No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG4240.10089472682276796No Hit

[OK]Adapter Content

Adapter graph