FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944086

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944086
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455548
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41680.9149420039161625No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18410.4041286538410881No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17450.38305513359733767No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15970.35056678988822254No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12880.28273639660365096No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12030.264077550554497No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9650.21183278161686583No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9450.20744246489941784No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9260.20327166401784225No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9190.20173505316673546No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8690.19075926137311544No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8440.18527136547630546No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8040.17649073204140947No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7770.17056380447285469No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6760.1483927050497423No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6500.1426852933170599No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6350.1393925557789739No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5590.12270935225267152No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4590.10075776866543151No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)