FastQCFastQC Report
Wed 31 May 2023
EGAF00007944088

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944088
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473001
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA12660.26765271109363403No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11760.24862526717702502No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9460.19999957716791295No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6420.13572909993847793No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5180.109513510542261No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4860.1027481971496889No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4760.10063403671451011No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)