FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944089

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944089
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421320
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG24920.5914744137472705No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG19710.46781543719737967No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18630.44218171461122185No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG18330.435061236115067No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18280.4338744896990411No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17460.4144118484762176No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16890.4008829393335232No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13790.32730466153992216No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13320.3161492452292794No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC12670.3007215418209437No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG12000.28481913984619767No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11020.2615589100920915No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10720.25443843159593654No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9960.23639988607234405No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG9760.23165290040824074No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9730.23094085255862526No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9650.22904205829298394No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9580.22738061331054782No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8720.20696857495490364No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8520.20222158929080036No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8160.1936770150954144No Hit
GCGGGTGTTGTTGCGAGCACGACCACGACGACCGCCCGGCGGCG7940.18845533086490077No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7710.182996297351182No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7680.1822842495015665No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7580.17991075666951487No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT7350.17445172315579607No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7000.1661444982436153No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6970.1654324503939998No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6660.1580746226146397No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA6540.15522643121617774No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6270.1488180005696383No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6190.14691920630399696No Hit
CGCGGACATCTGGGTCGGCTGCATCAGGCGTTCACCAGAATCGA6140.14573245988797112No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT5880.13956137852463685No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5780.13718788569258522No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG5670.13457704357732841No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5590.1326782493116871No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5420.1286433114971993No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5240.12437102439950631No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5220.12389632583309597No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4910.11653849805373588No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4890.11606379948732555No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4880.11582645020412037No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG4870.11558910092091522No Hit
TTTGGCAACAACCTGTACTGGCGGCACCGGCGGCGGGCTCAGGT4850.11511440235450489No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4800.11392765593847907No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4560.10823127314155512No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4460.10585778030950346No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4450.10562043102629831No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4440.10538308174309313No Hit
GTACATGTGCGGACGGTGCGGATGGTTATCGAAACCGTGCGGGT4430.10514573245988797No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4310.102297541061426No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)