FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944090

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944090
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421320
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40150.9529573720687363No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA38320.9095224532421913No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG24080.5715370739580367No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23050.5470900977879046No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20110.47730940852558623No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG19570.4644925472325073No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG19240.4566600208867369No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18230.43268774328301524No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17910.42509256622045005No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17840.42343112123801385No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13870.3292034558055635No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC12430.29502515902401977No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11710.27793601063324785No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC11530.27366372353555496No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11170.265119149340169No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10670.25325168517991076No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10450.24803000094939714No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA9600.22785531187695815No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8920.21171556061900693No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8850.21005411563657078No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8620.204595082122852No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7910.1877432830152853No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT7880.1870312351656698No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC7510.17824931168707872No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7480.1775372638374632No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7350.17445172315579607No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7130.16923003892528246No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7020.16661919681002563No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6950.16495775182758948No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6720.1594987183138707No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6530.15498908193297256No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT6500.15427703408335708No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA6380.1514288426848951No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6370.1511914934016899No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5880.13956137852463685No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5880.13956137852463685No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5820.13813728282540588No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5760.1367131871261749No Hit
TACGACGACTTCCATACCGATGAAGATAAAC5620.13339029716130257No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5440.12911801006360962No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5160.12247223013386499No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5020.11914934016899269No Hit
GCACCGAAGCCTTCCAAACAGAGCAAGAAGA4990.1184372923193772No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4980.11819994303617203No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4880.11582645020412037No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4860.11535175163771005No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4800.11392765593847907No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4780.11345295737206873No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4750.11274090952245325No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4670.11084211525681192No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4630.10989271812399126No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4460.10585778030950346No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4330.10277223962783633No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4280.1015854932118105No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4260.10111079464540018No Hit
GAATGCGACAACTATCGCCAGGAATACGATA4250.100873445362195No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)