FastQCFastQC Report
Wed 31 May 2023
EGAF00007944091

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944091
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443087
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG25550.5766361910866263No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG20930.47236772913671576No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19980.450927244536626No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG19840.44776759417450746No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19070.4303895171828558No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18720.4224903912775595No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17750.40059852805430984No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15460.3489156757025144No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14770.3333431132035018No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC13600.3069374637486543No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG12580.2839171539675053No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12110.27330975632325033No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11110.25074082516526097No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10720.2419389420136452No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10550.238102223716787No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG10340.23336274817360925No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC9860.22252966121777437No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9300.2098910597693004No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG9110.20560296284928242No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8890.2006377979945248No Hit
GCGGGTGTTGTTGCGAGCACGACCACGACGACCGCCCGGCGGCG8600.1940928079587079No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8490.19161022553132906No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8400.18957902172711003No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT8310.187547817922891No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8300.18732212861131112No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7900.17829455614811537No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA7630.17220094473545827No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7180.1620449257143631No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7140.16114216846804352No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6800.15346873187432716No Hit
CGCGGACATCTGGGTCGGCTGCATCAGGCGTTCACCAGAATCGA6790.15324304256274726No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6750.15234028531642768No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6210.14015306249111348No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6140.13857323731005425No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT5920.1336080724552966No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5720.12909428622369873No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5620.12683739310789982No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG5540.12503187861526066No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5520.12458049999210087No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5420.12232360687630195No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5320.12006671376050301No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5210.1175841313331242No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5090.11487585959416549No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5080.11465017028258559No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4850.10945931611624805No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4740.10697673368886922No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4710.10629966575412955No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4600.10381708332675073No Hit
TTTGGCAACAACCTGTACTGGCGGCACCGGCGGCGGGCTCAGGT4550.10268863676885127No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4540.10246294745727139No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4510.1017858795225317No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)