FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007944092

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944092
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443087
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA41090.9273573812817799No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG24920.562417764457093No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24550.554067259928637No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG21220.47891271917253275No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG20530.4633401566735201No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19880.44867035142082706No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19570.4416739827618503No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19550.44122260413869063No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19160.43242072098707474No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15760.3556863550499112No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC13760.3105484927339326No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC12680.2861740470833042No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12530.28278870740960577No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11970.27015010596113176No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11610.2620252907442556No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11240.25367478621579964No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA10670.24081049545574573No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG10060.22704344744937224No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA10050.22681775813779234No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9790.22094983603671514No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT8790.19838090487872584No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8570.1934157400239682No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC8180.18461385687235238No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8120.18325972100287302No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7950.17942300270601486No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7640.17242663404703817No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7600.1715238768007186No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7590.17129818748913872No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA7530.16994405161965934No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT7350.16588164401122127No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7340.1656559546996414No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7040.15888527535224461No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6960.15707976085960546No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6580.14850356701956952No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6390.14421547009955155No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6080.13721910144057486No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5970.13473651901319605No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5950.13428514039003628No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5890.13293100452055692No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5540.12503187861526066No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5530.12480618930368076No Hit
TACGACGACTTCCATACCGATGAAGATAAAC5450.12300067481104161No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5340.1205180923836628No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5290.11938964582576334No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5290.11938964582576334No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5200.1173584420215443No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4880.11013638405098773No Hit
GCACCGAAGCCTTCCAAACAGAGCAAGAAGA4870.10991069473940784No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4830.10900793749308826No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4770.10765380162360891No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4750.10720242300044912No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4670.10539690850780999No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4630.1044941512614904No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4610.10404277263833062No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4600.10381708332675073No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4500.1015601902109518No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)