FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944094

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944094
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444016
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24520.5522323519873158No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20710.46642463334654605No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20040.4513350870238911No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10930.24616230045764118No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10680.2405318727253072No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9200.2071997405498901No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9010.2029206154733163No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8730.19661453641310225No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC8470.1907588915714749No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8410.18940758891571474No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7400.1666606608770855No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6560.14774242369644336No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5950.13400418002954848No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5940.13377896292025512No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5600.12612158120428094No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5390.1213920219091204No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5180.11666246261395985No Hit
CGTCACGCACATCGCCAGGGTGTAGGCGGCA4970.11193290331879932No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4830.10877986378869231No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4480.10089726496342473No Hit

[OK]Adapter Content

Adapter graph