FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944098

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944098
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498427
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50861.0204102105223032No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA36010.7224728997425902No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25130.5041861696898442No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA22680.4550315291908344No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21220.4257393760771387No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18400.36916138170684976No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18390.3689607505211395No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15940.31980611002212966No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13660.2740621996801939No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12440.24958519502354407No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11070.22209872258124058No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10250.20564696535300053No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9750.19561540606748834No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG9700.1946122501389371No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9290.18638637152481707No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8300.1665238841395029No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8040.16130747331103654No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7700.15448601299688822No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7450.1494702333541321No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7160.14365192896853501No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6640.1332191073116023No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6460.1296077459688179No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA6450.12940711478310765No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6410.12860459004026667No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG5950.11937555549759545No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5760.11556356296910081No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5560.1115509392548959No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5410.10854147146924223No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5380.10793957791211149No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5360.107538315540691No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5260.10553200368358857No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5110.10252253589793492No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4990.10011496166941196No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)