FastQCFastQC Report
Sun 21 May 2023
EGAF00007944100

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944100
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483305
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA64841.3415958866554245No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39070.8083922160954262No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA29630.6130704213695285No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT27400.5669297855391523No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA24730.511685167751213No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT16730.34615822306824884No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15340.3173979164295838No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14090.29153433132287065No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13240.2739470934503057No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC11570.23939334374773694No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG11240.23256535727956465No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA10260.21228830655590156No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9210.1905628950662625No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8960.1853901780449199No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA8490.17566547004479574No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8010.16573385336381788No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7750.16035422766162155No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7710.15952659293820673No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7460.1543538759168641No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7120.14731898076783811No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6800.14069790298051954No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6520.13490445991661582No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6310.130559377618688No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5670.11731722204405086No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5590.11566195259722122No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA5550.11483431787380638No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5450.11276523106526935No Hit
AAAAAATCTGGCGATGCAATTCTGTCTATCG5390.11152377898014712No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5340.11048923557587859No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC5070.10490270119282855No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5060.10469579251197485No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5010.1036612491077063No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)