FastQCFastQC Report
Sun 21 May 2023
EGAF00007944102

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944102
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447192
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC44450.9939802143151041No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38990.8718850068874219No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG35980.8045761104849818No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT29510.6598955258591388No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT28990.6482674108660262No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG27290.610252419542389No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA26140.5845363959999285No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC18720.4186121397520528No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG18000.40251167283851236No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG17060.3814916188125011No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC14660.32782339576736613No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG14260.3188786919265103No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC13850.30971037048963307No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT13780.3081450473174833No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG12060.2696828208018033No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT11500.2571602354246051No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11050.2470974436036423No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9390.20997692266409057No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9160.2048337179555985No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8820.19723071969087103No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8580.19186389738635753No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8330.18627345748582264No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC8020.17934131200915937No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC7950.1777759888370096No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC7440.16637149143991842No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC7380.16502978586379005No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT6810.15228358289057048No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6740.1507182597184207No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5770.12902735290434533No Hit
GGTATTGTTTCCAACAACTCTATTCGCATCG5590.12500223617596024No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5430.12142435463961788No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5120.11449220916295462No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5080.11359773877886903No Hit
GAACGCGCACGTGGTCGTGGCCGTGGCCGTG5000.11180879801069787No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4690.1048766525340346No Hit
GTGAGCGATGCCGTCGCTAACGGCCTGAAGG4650.10398218214994902No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4590.10264047657382064No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)