FastQCFastQC Report
Sun 21 May 2023
EGAF00007944104

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944104
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458902
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38550.8400486378355292No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15270.332750783391661No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG10260.2235771471904677No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG10250.2233592357409643No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG10130.22074429834692375No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10080.21965474109940683No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG9540.20788752282622433No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7230.1575499779909436No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7130.1553708634959098No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC6720.14643649406627124No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6620.14425737957123744No Hit
ACCGTTACCCCGCCAACTCAGACCGGTTGCG6470.14098870782868672No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG5990.1305289582525245No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5980.13031104680302114No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5860.12769610940898057No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5650.1231199689694096No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5640.12290205751990621No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC5340.11636471403480482No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4880.10634078735764935No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)