FastQCFastQC Report
Sun 21 May 2023
EGAF00007944105

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944105
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474853
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21530.4534034743383742No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC21100.44434804034090547No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18420.3879095214729611No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17860.3761163981274205No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12790.26934651355261524No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG11910.2508144625810514No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10500.22112106272888662No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10430.21964692231069405No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9260.19500771817804666No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8510.17921335655455478No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8210.17289561190515804No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7400.15583770135178676No Hit
GGACGCAGAACGACCGGTCACGACGCTAGAGCGGTGTTTAGCGC6950.1463610843776916No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6760.14235984609974034No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6480.13646328442697003No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6360.13393618656721132No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6280.13225145466070554No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT6210.13077731424251296No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6190.1303561312658865No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA5580.11751005047877974No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5570.11729945899046651No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5560.11708886750215329No Hit
CGCAACACCTACGCTCTGCAGCAGTTGAGCATGTGCAGACTGGG5480.1154041355956475No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5320.11203467178263589No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5250.11056053136444331No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5110.10761225052805816No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)