FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944106

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944106
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474853
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23020.4847816060970448No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22410.47193552530993804No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG21590.4546670232682536No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18020.37948586194043205No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15270.3215732026542951No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13170.27734899010851777No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12810.26976769652924165No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11840.2493403221628588No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC11140.23459891798093302No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10920.2299659052380421No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9740.2051161096170815No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9410.19816659050274507No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9010.18974293097021602No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8080.1701579225570861No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7960.1676308246973274No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7210.1518364630738355No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7020.1478352247958842No Hit
CTGGGTGAGGCAGAATCCTTCACCATGGCCA6980.1469928588426313No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6890.14509753544781226No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6740.1419386631231139No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG6480.13646328442697003No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6120.12888199084769392No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6080.128039624894441No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5780.12172188024504427No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5570.11729945899046651No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5530.11645709303721363No Hit
GCGACCGGCCTGGAAGACCAGGCAGAACGTA5500.11582531857227395No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5440.11456176964239459No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5410.11392999517745492No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4990.10508515266829946No Hit
ATGGGTGCACAGGTTTCCACTCAGAAATCTG4980.10487456117998623No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4780.10066273141372173No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4770.10045213992540848No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)