FastQCFastQC Report
Sun 21 May 2023
EGAF00007944107

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944107
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462986
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC20380.4401860963398461No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20300.4384581823208477No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18370.3967722566125109No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17430.37646926688927956No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12790.2762502537873715No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG11780.25443533929751655No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11420.2466597262120237No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10590.22873261826491514No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9500.20518978975606175No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9160.19784615517531848No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7610.1643678210572242No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7410.16004803600972814No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6910.14924857339098804No Hit
GGACGCAGAACGACCGGTCACGACGCTAGAGCGGTGTTTAGCGC6880.14860060563386368No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6840.14773664862436445No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6830.14752065937198966No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6730.14536076684824165No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT6500.1403930140436212No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6120.13218542245337872No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5980.12916157292013147No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5900.1274336589011331No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5680.12268189534888745No Hit
CGCAACACCTACGCTCTGCAGCAGTTGAGCATGTGCAGACTGGG5310.11469029301101977No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5170.11166644347777253No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5100.11015451871114892No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5050.10907457244927492No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4920.1062667121684025No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA4770.10302687338278047No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)