FastQCFastQC Report
Sun 21 May 2023
EGAF00007944108

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944108
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462986
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40170.867628826789579No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22250.48057608653393413No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20940.452281494472835No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG20230.43694625755422406No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17080.36890964305616153No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14910.3220399752908295No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14390.31080853416733983No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11960.25832314584026295No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11790.25465132854989136No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC10970.23694020985515762No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10880.2349963065837844No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9660.20864561779405857No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7840.1693355738618446No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7810.16868760610472022No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7800.16847161685234543No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7640.1650157888143486No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6950.15011253040048728No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6850.14795263787673926No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6760.14600873460536604No Hit
CTGGGTGAGGCAGAATCCTTCACCATGGCCA6700.14471279909111723No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG6610.142768895819744No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6250.13499328273425115No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5840.12613772338688425No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5670.12246590609651263No Hit
GCGACCGGCCTGGAAGACCAGGCAGAACGTA5370.11598622852526859No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5330.11512227151576938No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5300.11447430375864498No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5260.11361034674914577No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5040.10885858319690013No Hit
ATGGGTGCACAGGTTTCCACTCAGAAATCTG4730.10216291637328127No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4640.10021901310190806No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)